2007 Presentations
Current status of docking procedures: General overview by the CAPRI assessors
- The Targets of CAPRI Rounds 6-12 (Joel Janin) - PDF
- CAPRI Rounds Rounds 6-12: overview of prediction results (Dr. Shoshana Wodak) - PDF
- The CAPRI Scoring experiment: what have we learned? (Marc Lensink) - PDF
Recent results and new methodology for the prediction of protein complexes: Reports by individual CAPRI participants.
- The Performance of ZDOCK and ZRANK in Rounds 6-11 of CAPRI (Brian Pierce and Zhiping Weng) - PDF
- Prediction-driven and data-driven docking with HADDOCK2.0: performance on the docking benchmark and CAPRI targets.(Sjoerd J.de Vries and Alexandre M. J.J. Bonvin) - PDF Part 1
- An FFT-Based Protein Docking Program with Pairwise Potentials (Dima Kozakov) - PDF
- A Holistic Approach to Docking ( Huan-Xiang Zhou) - PDF
- Inherent Limitations in Protein-Protein Docking Procedures (Miriam Eisenstein) - PDF
Recent results and new methodology for the prediction of protein complexes: Reports by individual CAPRI participants
- Implicit flexibility in protein docking: cross-docking and local refinement (Marcin Krol)
- Incorporating backbone flexibility into protein-protein docking with RosettaDock (Chu Wang) - PDF
- Fully automated flexible docking with explicit consideration of hinge motion in one of the proteins. (Dina Scheidman-Duhovny) - PDF
- Accounting efficiently for global and local flexibility during systematic protein-protein docking. (Andreas May) - PDF
- Performance of the ClusPro Server in CAPRI Rounds 6-11 ( Stephen R. Comeau Jr & Sandor Vajda) - PDF
- How not to bury acidic groups in protein interfaces: Solvated Asp cavities and missing targets in CAPRI. (Carlos J. Camacho) - PDF
Recent results and new methodology for the prediction of protein complexes: Reports by individual CAPRI participants and others:
- Towards ensemble docking in RosettaDock: Local docking of idealized, energy minimized structures with multiple backbone conformations. (Sidhartha Chaudhury) - PDF
- SOFTDOCK Application to protein-protein interaction benchmark and CAPRI evaluation (Nan Li) - PDF
- Funnel hunting in a rough terrain: Learning and discriminating energy funnels (Ora Schueler-Furman) - PDF
- Multi-Scale Scoring Scheme for Prediction of Protein Assemblies (Gaurav Chopra)
Highlighting Alternative Approaches
- Protein-Protein Docking using Steered Molecular Dynamics Simulations in Water ( Sandeep Pal) - PDF
- A General Approach for Developing System Specific Functions to Score Protein Ligand Using Support Vector Inductive Logic Programming. (Michael J E Sternberg)
Part 1 - PDF
Part 2 - PDF - Prediction of protein-protein interaction using Evolutionary Trace method and molecular surface shape complementarities (Eiji Kanamori) - PDF
- Docking without Docking: Prediction of interactions using known interfaces ( Stefan Gunther) - PDF
- Dockground integrated system of databases for protein docking, 2nd release (Ilya Vakser) - PDF
Invited Speakers